PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g49810.1.p
Common NameBRADI_3g49810, LOC100827069
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 471aa    MW: 50937 Da    PI: 7.0736
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g49810.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.9e-19217267256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                        y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Bradi3g49810.1.p 217 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 267
                       59******9.**********955...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.95E-32216276No hitNo description
SMARTSM003805.9E-39217280IPR001471AP2/ERF domain
PROSITE profilePS5103222.998217274IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-23217275IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.2E-32217275IPR001471AP2/ERF domain
PRINTSPR003678.6E-11218229IPR001471AP2/ERF domain
PfamPF008472.8E-12218267IPR001471AP2/ERF domain
PRINTSPR003678.6E-11240256IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MEAADRGAGG RGRERRWKGK GASSAAEKQR PLPPQQLAPV LEDAPPAALL RPLKKPDCRL  60
HRSVSSLSSA PASSGSSSVS DPISPPAVGS SLPYPSPGST RHIFPFAYDP SPAAAPRLLQ  120
LLQYSSSLYQ QQPLLPQQLQ QQQQQTPLQN QQMISFGDAQ HEAQQPPLIP PQLMAPEALR  180
YWSEALNLSP RGVLGGLVPV PQSLFQHLLR APVPAKLYRG VRQRHWGKWV AEIRLPRNRT  240
RLWLGTFDTA EDAAMAYDRE AFKLRGENAR LNFPDLFLGK GRAGGSGRTS ASAAASRSSS  300
SCSSAPPTPD ETRTQQARQA LLLREQQQQQ QQEHLEEPSD IEPTPLFSAA EEQEGIPEAE  360
QSPQLLHKAE QQCGEGSTAM AQAPVTSGGV WGPADEAWFS AWGPGSSVWD YDMDSAHGLF  420
LQSRFAGEQT GMDYVPSAPE AHMAPAPGAA SPSLPPRPPP SHSPTFVWKD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-20216274463ATERF1
3gcc_A6e-20216274463ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569954.10.0PREDICTED: ethylene-responsive transcription factor ERF054
TrEMBLA0A0Q3I3P80.0A0A0Q3I3P8_BRADI; Uncharacterized protein
STRINGBRADI3G49810.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.19e-39ERF family protein